PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G15060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 328aa    MW: 36830.3 Da    PI: 6.8841
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G15060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.5e-131167155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  OBART05G15060.1 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
                     57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-151177IPR016177DNA-binding domain
PfamPF008479.8E-91167IPR001471AP2/ERF domain
SMARTSM003802.2E-181281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-121276IPR001471AP2/ERF domain
PROSITE profilePS5103218.2281275IPR001471AP2/ERF domain
PRINTSPR003672.9E-51324IPR001471AP2/ERF domain
PRINTSPR003672.9E-55777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  60
AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR QLHNSRWDAS LGHLLGNDYM  120
SLGKDITLDG KFAGTFGLER KIDLTNYIRW WLPKKTRQSD TSKMEEVTDE IRAIESSMQR  180
TEPYKFPSLG LHSNSKPSSV VLSACDILSQ SDAFKSFSEK STKLSEECTF SKEMDEGKTV  240
TPVPATGHDT TAVNMNVNGL LVQRAPYTLP SVTAQMKNTW NPADPSADPL FWTNFILPAS  300
QPVTMATIAT TTFAKNEVSS SDPFHGQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8978770.0AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds.
GenBankAK0593240.0AK059324.1 Oryza sativa Japonica Group cDNA clone:001-025-H11, full insert sequence.
GenBankEU3348570.0EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638088.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK24e-85AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0D3G7660.0A0A0D3G766_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HDU20.0A0A0E0HDU2_ORYNI; Uncharacterized protein
STRINGLOC_Os05g32270.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-80AP2 family protein